NormalizedCounts: NormalizeCounts

Description Usage Arguments Value Author(s) Examples

Description

This function normalize counts use of Total sum scaling or NOISeq::tmm to normalize the read counts

Usage

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    NormalizeCounts(allCounts,
                    method)

Arguments

allCounts

Matrix or vector with sample read counts (rows: amplicons, columns: samples)

method

either "tmm" (trimmed mean of m values) or "tss"(total sum scaling)

Value

A matrice

samples

The samples matrix normalized

Author(s)

Cristiano Oliveira, Thomas Wolf

Examples

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biostuff/CNVPanelizer documentation built on May 12, 2019, 9:25 p.m.