getComp: Retrieve feature and sample values on a component stored in...

In bitona/MineICA: Analysis of an ICA decomposition obtained on genomics data

Retrieve feature and sample values on a component stored in an IcaSet object.

Description

This generic function retrieves, from an IcaSet object, the feature projections (contained in attribute S) and sample contributions (contained in attribute A) corresponding to a specific component.

Usage

getComp(object, level, ind)

Arguments

object	Object of class IcaSet.
level	Either "features" to retrieve projections contained in S, or "genes" to retrieve projections contained in SByGene.
ind	The index of the component to be retrieved.

Value

getComp returns a list containing two elements:

proj:

the feature or gene projections on the given component,

contrib:

the sample contributions on the given component.

Author(s)

Anne Biton

See Also

class-IcaSet

bitona/MineICA documentation built on April 23, 2023, 1:41 p.m.