nodeAttrs: Generate node attributes

In bitona/MineICA: Analysis of an ICA decomposition obtained on genomics data

Generate node attributes

Description

This function builds a data.frame describing for each node of the graph its ID and which analysis/data it comes from.

Usage

  nodeAttrs(nbAn, nbComp, labAn, labComp, file)

Arguments

nbAn	Number of analyses being considered, i.e number of IcaSet objects
nbComp	Number of components by analysis, if of length 1 then it is assumed that each analysis has the same number of components.
labAn	Labels of the analysis, if missing it will be generated as an1, an2, ...
labComp	List containing the component labels indexed by analysis, if missing will be generated as comp1, comp2, ...
file	File where the description of the node attributes will be written

Details

The created file is used in Cytoscape.

Value

A data.frame describing each node/component

Author(s)

Anne Biton

Examples

## 4 datasets, 20 components calculated in each dataset, labAn
nodeAttrs(nbAn=4, nbComp=20, labAn=c("tutu","titi","toto","tata"))

bitona/MineICA documentation built on April 23, 2023, 1:41 p.m.