Ape.fimo: Run FIMO on Selected Ape Object Features
In blaserlab/blaseRtools: R Tools for Blaser Lab Data Analysis
Ape.fimo R Documentation
Run FIMO on Selected Ape Object Features
Description
For the supplied Ape object, run FIMO to identify putative transcription factor binding sites in a DNA subsequence.
Usage
Ape.fimo(ape, fimo_feature, out = NULL)
Arguments
ape
An Ape instance
fimo_feature
A character vector of features from the Ape object that will be used to run fimo.
out
Directory that will be created to hold the fimo results. A date/time stamp will be appended. If null, the objects will not be saved and the function will only return a GRanges object
blaserlab/blaseRtools documentation built on April 14, 2025, 6:04 p.m.
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| Ape.fimo | R Documentation |
Run FIMO on Selected Ape Object Features
Description
For the supplied Ape object, run FIMO to identify putative transcription factor binding sites in a DNA subsequence.
Usage
Ape.fimo(ape, fimo_feature, out = NULL)
Arguments
ape |
An Ape instance |
fimo_feature |
A character vector of features from the Ape object that will be used to run fimo. |
out |
Directory that will be created to hold the fimo results. A date/time stamp will be appended. If null, the objects will not be saved and the function will only return a GRanges object |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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