bb_gosummary: A function to reduce go terms by semantic similarity

In blaserlab/blaseRtools: R Tools for Blaser Lab Data Analysis

A function to reduce go terms by semantic similarity

Description

A function to reduce go terms by semantic similarity

Usage

bb_gosummary(
  x,
  reduce_threshold = 0.8,
  go_db = c("org.Hs.eg.db", "org.Dr.eg.db", "org.Mm.eg.db")
)

Arguments

x	A list go term enrichment results produced by bb_goenrichment.
reduce_threshold	The degree of term reduction. 0 to 1. Higher is more reduction.
go_db	The database to query. Choose from c("org.Hs.eg.db", "org.Dr.eg.db", "org.Mm.eg.db", ...).

Value

A list of items for downstream plotting

blaserlab/blaseRtools documentation built on April 14, 2025, 6:04 p.m.