bb_make_ape_transcript: Make an Ape Transcriptome Object

In blaserlab/blaseRtools: R Tools for Blaser Lab Data Analysis

Make an Ape Transcriptome Object

Description

This function takes a specific ensembl transcript identifier, such as ENST00000348343.11, and gets the cDNA sequence from the corresponding transcriptomic reference. This is returned as an Ape object with the UTR's and the CDS annotated as features.

Usage

bb_make_ape_transcript(query, transcriptome = c("hg38", "GRCz11"))

Arguments

query	A specific ensembl transcript identifier.
transcriptome	Genome/transcriptome reference to use, Default: c("hg38", "GRCz11")

Details

DETAILS

Value

OUTPUT_DESCRIPTION

See Also

TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38 org.Hs.eg.db character(0) BSgenome.Drerio.UCSC.danRer11 org.Dr.eg.db cli_abort matchPattern

Examples

## Not run: 
if(interactive()){
 #EXAMPLE1
 }

## End(Not run)

blaserlab/blaseRtools documentation built on April 14, 2025, 6:04 p.m.