bb_goenrichment: Go Term Enrichment

In blaserlab/blaseRtools: R Tools for Blaser Lab Data Analysis

Go Term Enrichment

Description

A function to find enriched go terms from a query list of gene names relative to a reference list of gene names.

Usage

bb_goenrichment(
  query,
  reference,
  group_pval = 0.01,
  go_db = c("org.Hs.eg.db", "org.Dr.eg.db", "org.Mm.eg.db")
)

Arguments

query	A vector of gene names
reference	The background gene list. Usually will be as_tibble(rowData(cds_main)).
group_pval	P value to determine enrichment. Default: 0.01.
go_db	GO term database Default: c("org.Hs.eg.db", "org.Dr.eg.db", "org.Mm.eg.db")

Value

A list of items including the enrichment results.

blaserlab/blaseRtools documentation built on April 14, 2025, 6:04 p.m.