bootCIFoldChange: Get bootstrap confidence intervals for fold change

Description Usage Arguments

Description

This function calculates bootstrap confidence intervals for the fold change.

Usage

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bootCIFoldChange(data, strata, protein.names, R = 999,
  int.width = 0.95)

Arguments

data

data.frame, matrix or similar containing only the data to be used to calculate fold changes. (no protein names, etc)

strata

vector or factor containing the indices for the groups. For example, if the first three samples are case and the other three samples are control, c(1,1,1,2,2,2)

protein.names

a vector containing the names of the proteins. Should be the same length as the number of rows in data

R

the number of bootstrap replicates to perform

int.width

the required width of the interval


bramburger/colvano documentation built on Nov. 4, 2019, 8:12 a.m.