prediction.p.BCbootstrap: Bias Corrected Bootstrap p-value intervals for limma output

In bramburger/colvano: Provide Intervals for Volcano Plots

Description

Calcualte BC bootstrap p-value intervals from the output of a limma eBayes output.

Usage

prediction.p.BCbootstrap(fit, data, width, B, seed = NULL,
  sampleSizeRatio = 1)

Arguments

fit	The output from the limma eBayes function.
data	The data which is the input to the limma lmFit function.
width	Width of the required interval.
B	Number of bootstraps to calculate the bootstrap intervals.
seed	Seed to make replication possible.
sampleSizeRatio	Ratio of sample sizes of replication and original experiment. Calculated as sample size of replication experiment divided by the sample size of the original experiment. Default value is 1.

bramburger/colvano documentation built on Nov. 4, 2019, 8:12 a.m.