skatr: Use SKAT to associate a covariate with a cluster of data.

In brentp/clustermodelr: Models on clusters of correlated data

Description

An example model would look like: disease ~ 1 And the result would be testing if adding the correlated matrix of data (with all the assumptions of SKAT) improves that null model.

Usage

skatr(formula, covs, meth, r.corr = c(0, 0.015, 0.06, 0.15))

Arguments

formula	an R formula containing "methylation"
covs	covariate data.frame containing the terms in formula except "methylation" which is added automatically
meth	a matrix of correlated data.
r.corr	list of weights between kernel and rare variant test.

Value

list(covariate, p, coef) where p and coef are for the coefficient of the first term on the RHS of the model.

brentp/clustermodelr documentation built on May 13, 2019, 5:11 a.m.