AMARETTO_ExportResults: AMARETTO_ExportResults

In broadinstitute/PerturbationAMARETTO: Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression

Description

Retrieve a download of all the data linked with the run (including heatmaps)

Usage

AMARETTO_ExportResults(AMARETTOinit, AMARETTOresults, data_address,
  Heatmaps = TRUE, CNV_matrix = NULL, MET_matrix = NULL)

Arguments

AMARETTOinit	AMARETTO initialize output
AMARETTOresults	AMARETTO results output
data_address	Directory to save data folder
Heatmaps	Output heatmaps as pdf
CNV_matrix	CNV_matrix
MET_matrix	MET_matrix

Value

result

Examples

data('ProcessedDataLIHC')
TargetDirectory <- file.path(getwd(),"Downloads/");dir.create(TargetDirectory)
AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,
                                    NrModules = 2, VarPercentage = 50)

AMARETTOresults <- AMARETTO_Run(AMARETTOinit)
AMARETTO_ExportResults(AMARETTOinit,AMARETTOresults,TargetDirectory,Heatmaps = FALSE)

broadinstitute/PerturbationAMARETTO documentation built on Nov. 4, 2019, 8:14 a.m.