step0_set_up: FAC Step 0: Set up survival matrices & other preliminaries

In brouwern/FACavian: An R implementation and extension of full-annual cycle (FAC) model of Runge & Marra *2005)

FAC Step 0: Set up survival matrices & other preliminaries

Description

FAC Step 0: Set up survival matrices & other preliminaries

Usage

step0_set_up(
  param.set = param_set(),
  iterations = 150,
  use.IBM = F,
  use.IBM.S.b = F
)

Arguments

param.set	Initial parameters and population state for a single run of model to equilibirum
iterations	Number of iterations to run model to allow it to reach equilibrium
use.IBM	Use individual-based modeling implementation of breeding territory aquisition and mate pairing
use.IBM.S.b	Used individual-based modeling implementation of breeding survibal.

Value

runFAC.i list ...

Examples

# Initialize model
runFAC.i <- step0_set_up()

# Look at structure of list
## Elements for model output, matrices, parameters, etc
str(runFAC.i,1)

# Look at top of dataframe to hold output
head(runFAC.i$FAC.out.RM)[,1:5]

# Look at 2nd matrix used in model, winter survival
runFAC.i$param.matrices[2]
runFAC.i$param.matrices$S.w

brouwern/FACavian documentation built on June 1, 2024, 10:32 p.m.