add.marker | Creates a new sequence by adding markers. |
Bonferroni.alpha | Calculates individual significance level to be used to... |
combine.onemap | Combine OneMap datasets |
compare | Compare all possible orders (exhaustive search) for a given... |
create.data.bins | New dataset based on bins |
create.dataframe.for.plot.outcross | Create a dataframe suitable for a ggplot2 graphic |
draw.map | Draw a genetic map |
drop.marker | Creates a new sequence by dropping markers. |
est_map_hmm_out | C++ routine for multipoint analysis in outcrossing... |
example.out | Data from a full-sib family derived from two outbred parents |
find.bins | Allocate markers into bins |
group | Assign markers to linkage groups |
make.seq | Create a sequence of markers |
map | Construct the linkage map for a sequence of markers |
map_func | Mapping functions Haldane and Kosambi |
map.overlapping.batches | Mapping overlapping batches |
marker.type | Informs the segregation patterns of markers |
onemap-internal | Internal onemap functions |
order.seq | Search for the best order of markers combining compare and... |
pick.batch.sizes | Picking optimal batch size values |
plot.by.segreg.type | Draw a graphic showing the number of markers of each... |
plot.onemap | Draw a graphic of raw data for any OneMap population |
plot.onemap.segreg.test | Plot p-values for chi-square tests of expected segregation |
print.group | Print group result |
print.onemap.segreg.test | Print segregation test result |
print.outcross | Print read.outcross result |
print.rf.2pts | Print twopoint test result |
print.try | Print try.seq result |
pseudo.testcross.split | Split a dataset into parent-specific subsets |
rcd | Rapid Chain Delineation |
read.mapmaker | Read data from a Mapmaker raw file |
read.onemap | Read data from all types of progenies supported by OneMap |
read.outcross | Read data from a full-sib progeny (outcrossing populations) |
read.outcross2 | Read data from a full-sib progeny (outcrossing populations) |
record | Recombination Counting and Ordering |
record.parallel | Recombination Counting and Ordering |
rf.2pts | Two-point analysis between genetic markers |
ripple.ord | Update linkage map with alternative orders at all positions |
ripple.seq | Compares and displays plausible alternative orders for a... |
ripple.window | Update linkage map with alternative orders at a given... |
seeded.map | Construct the linkage map for a sequence of markers after... |
select.segreg | Show markers with/without segregation distortion |
seriation | Seriation |
set.map.fun | Defines the default mapping function |
suggest.lod | Suggests a LOD Score for two point tests |
test.segregation | test.segregation |
test.segregation.of.a.marker | test.segregation.of.a.marker |
try.seq | Try to map a marker into every possible position between... |
ug | Unidirectional Growth |
write.map | Write a genetic map to a file |
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