pick.batch.sizes: Picking optimal batch size values

In bschiffthaler/BatchMap: Software for the Creation of High Density Linkage Maps in Outcrossing Species

Description

Suggest an optimal batch size value for use in map.overlapping.batches

Usage

pick.batch.sizes(input.seq, size = 50, overlap = 15, around = 5)

Arguments

input.seq	an object of class sequence.
size	The center size around which an optimum is to be searched
overlap	The desired overlap between batches
around	The range around the center which is maximally allowed to be searched.

Value

An integer value for the size which most evenly divides batches. In case of ties, bigger batch sizes are preferred.

Author(s)

Bastian Schiffthaler, [e-mail]

See Also

map.overlapping.batches

Examples

## Not run: 
  LG <- structure(list(seq.num = seq(1,800)), class = "sequence")
  batchsize <- pick.batch.sizes(LG, 50, 19)

## End(Not run)

bschiffthaler/BatchMap documentation built on Dec. 16, 2019, 2:22 a.m.