drop.marker: Creates a new sequence by dropping markers.

Description Usage Arguments Value See Also Examples

View source: R/drop.marker.R

Description

Creates a new sequence by dropping markers from a predetermined one.

Usage

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drop.marker(input.seq, mrks)

Arguments

input.seq

an object of class sequence.

mrks

a vector containing the markers to be removed from the sequence.

Value

An object of class sequence, which is a list containing the following components:

seq.num

a vector containing the (ordered) indices of markers in the sequence, according to the input file.

seq.phases

a vector with the linkage phases between markers in the sequence, in corresponding positions. -1 means that there are no defined linkage phases.

seq.rf

a vector with the recombination fractions between markers in the sequence. -1 means that there are no estimated recombination fractions.

seq.like

log-likelihood of the corresponding linkage map.

data.name

name of the object of class outcross with the raw data.

twopt

name of the object of class rf.2pts with the 2-point analyses.

@author Marcelo Mollinari, mmollina@usp.br

See Also

add.marker

Examples

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data(example.out)
twopt <- rf.2pts(example.out)
all.mark <- make.seq(twopt,"all")
groups <- group(all.mark)
(LG1 <- make.seq(groups,1))
(LG.aug<-drop.marker(LG1, c(10,14)))

bschiffthaler/BatchMap documentation built on Dec. 16, 2019, 2:22 a.m.