API for bvieth/powsimR
Power Simulations for RNA-sequencing
| Global functions | |
|---|---|
| .Census.calc | Source code |
| .MR.calc | Source code |
| .PoissonBetaFit | Source code |
| .PosCounts.calc | Source code |
| .SCnorm.calc | Source code |
| .SCnormclust.calc | Source code |
| .TMM.calc | Source code |
| .UQ.calc | Source code |
| .baynorm.calc | Source code |
| .calculateCPM | Source code |
| .calculateExpr | Source code |
| .calculateTPM | Source code |
| .calibrate_per_cell_total_proposal | Source code |
| .comp.FC | Source code |
| .count.filter | Source code |
| .counts_to_tpm | Source code |
| .de.calc | Source code |
| .depth.calc | Source code |
| .dmode | Source code |
| .drimpute.impute | Source code |
| .dropGene | Source code |
| .error.matrix | Source code |
| .estimateEVGammaTheta | Source code |
| .estimateGammaTheta | Source code |
| .estimateSizeFactorsForDenseMatrix | Source code |
| .estimateVGammaThetaInitial | Source code |
| .estimate_t | Source code |
| .estimate_table_print | Source code |
| .feat_plot | Source code |
| .find_hv_genes | Source code |
| .find_neighbors | Source code |
| .find_va_genes | Source code |
| .fitdistrplusGOF | Source code |
| .fiterror.sf | Source code |
| .fn | Source code |
| .freq.filter | Source code |
| .genespike_ratio_plot | Source code |
| .get_mix | Source code |
| .gg_color_hue | Source code |
| .imputation_model8 | Source code |
| .impute.calc | Source code |
| .impute_nnls | Source code |
| .lfc.evaluate | Source code |
| .linnormnorm.calc | Source code |
| .magic.impute | Source code |
| .margs_plot | Source code |
| .meanvsdisp_plot | Source code |
| .meanvsdrop_plot | Source code |
| .myAIC | Source code |
| .myGOF | Source code |
| .none.calc | Source code |
| .norm.calc | Source code |
| .perf.summary.calc | Source code |
| .plain | Source code |
| .pr_plot | Source code |
| .prefilter.calc | Source code |
| .ratio.sf | Source code |
| .readumi_plot | Source code |
| .relative2abs | Source code |
| .repmat | Source code |
| .roc.calc | Source code |
| .roc_plot | Source code |
| .run.DESeq2 | Source code |
| .run.DESeq2.zinbwave | Source code |
| .run.DESeq2.zinger | Source code |
| .run.EBSeq | Source code |
| .run.MAST | Source code |
| .run.NBPSeq | Source code |
| .run.NOISeq | Source code |
| .run.ROTS | Source code |
| .run.baySeq | Source code |
| .run.checkup | Source code |
| .run.edgeR.zinbwave | Source code |
| .run.edgeR.zinger | Source code |
| .run.edgeRLRT | Source code |
| .run.edgeRQL | Source code |
| .run.estParam | Source code |
| .run.estparams | Source code |
| .run.estparams.nb | Source code |
| .run.estparams.zinb | Source code |
| .run.fit.NB | Source code |
| .run.fit.ZINB | Source code |
| .run.fit.readumi | Source code |
| .run.fits | Source code |
| .run.limma.trend | Source code |
| .run.limma.voom | Source code |
| .run.params | Source code |
| .run.thin | Source code |
| .saver.impute | Source code |
| .sc.NB_counts | Source code |
| .sc.ZINB_counts | Source code |
| .scimpute.impute | Source code |
| .scone.impute | Source code |
| .scores.summary.calc | Source code |
| .scran.calc | Source code |
| .scranclust.calc | Source code |
| .scrangroups.calc | Source code |
| .sctransform.calc | Source code |
| .seqdepth_plot | Source code |
| .setFC | Source code |
| .setMarker | Source code |
| .sf.calc | Source code |
| .sf_plot | Source code |
| .simRNAseq.2grp | Source code |
| .simSpike | Source code |
| .simulateCountGenes | Source code |
| .summary_table_print | Source code |
| .theme_eval_de | Source code |
| .theme_eval_dist | Source code |
| .theme_eval_roc | Source code |
| .theme_eval_sim | Source code |
| .theme_eval_time | Source code |
| .theme_param_fit | Source code |
| .theme_param_margs | Source code |
| .theme_param_qc | Source code |
| .threshold.avg | Source code |
| .tprvsfdr.summary.calc | Source code |
| .tprvsfdr_plot | Source code |
| .update_gmm_pars | Source code |
| Bulk_Read_Counts | Man page |
| GeneCounts | Man page |
| GeneLengths_hg19 | Man page |
| GeneLengths_mm10 | Man page |
| Setup | Man page Source code |
| SpikeCounts | Man page |
| SpikeInfo | Man page |
| estimateCellType | Source code |
| estimateParam | Man page Source code |
| estimateSpike | Man page Source code |
| evaluateDE | Man page Source code |
| evaluateDist | Man page Source code |
| evaluateROC | Man page Source code |
| evaluateSim | Man page Source code |
| plotEvalDE | Man page Source code |
| plotEvalDist | Man page Source code |
| plotEvalROC | Man page Source code |
| plotEvalSim | Man page Source code |
| plotParam | Man page Source code |
| plotSpike | Man page Source code |
| plotTime | Man page Source code |
| printEvalDE | Man page Source code |
| simulateDE | Man page Source code |
