title: "Derived Data for R/doqtl2" author: "Brian S Yandell" date: "June 12, 2016" output: html_document
These files are for converting the DOQTL
data (or rather, that curated by Karl Broman with R/qtl2
packages) for use with the R/doqtl2
package. There are some conversions and some new files.
The derived data go into a folder called DerivedData
. This is in a
hard-wired folder that is, for now, machine specific. On my laptop it is:
dirpath <- file.path("~/Documents/Research/attie_alan/DO", "data")
datapath <- file.path(dirpath, "DerivedData")
The files in this derived_data
folder have this hard-wired. The only other place where it is hard-wired is for the shiny server, which is in
inst/shiny/setup.R
. These will have to be changed for local installation.
It would be nice to have this in only one place. Next iteration.
RDS files are apparently an improvement on RData files. They hold one R object and are the same size, but are quicker to use. See for instance R bloggers.
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