API for byandell/qtl
Tools for analyzing QTL experiments
| Global functions | |
|---|---|
| +.scanone | Man page |
| +.scanoneperm | Man page |
| +.scantwo | Man page |
| +.scantwoperm | Man page |
| -.scanone | Man page |
| -.scanoneperm | Man page |
| -.scantwo | Man page |
| -.scantwoperm | Man page |
| MQM | Man page |
| [.cross | Man page |
| [.map | Man page |
| [.scanoneperm | Man page |
| [.scantwoperm | Man page |
| add.cim.covar | Man page |
| add.threshold | Man page |
| addcovarint | Man page |
| addint | Man page |
| addloctocross | Man page |
| addmarkerstointervalmap | Man page |
| addpair | Man page |
| addqtl | Man page |
| addtoqtl | Man page |
| allchrsplits | Man page |
| argmax.geno | Man page |
| badorder | Man page |
| bayesint | Man page |
| bristle3 | Man page |
| bristleX | Man page |
| c.cross | Man page |
| c.scanone | Man page |
| c.scanoneperm | Man page |
| c.scantwo | Man page |
| c.scantwoperm | Man page |
| calc.errorlod | Man page |
| calc.genoprob | Man page |
| calc.penalties | Man page |
| calc.plod | Man page |
| cbind.scanone | Man page |
| cbind.scanoneperm | Man page |
| cbind.scantwo | Man page |
| checkAlleles | Man page |
| checkcovar | Man page |
| chrlen | Man page |
| chrnames | Man page |
| cim | Man page |
| clean | Man page |
| clean.cross | Man page |
| clean.scantwo | Man page |
| cleanGeno | Man page |
| comparecrosses | Man page |
| comparegeno | Man page |
| compareorder | Man page |
| condense | Man page |
| condense.scantwo | Man page |
| convert | Man page |
| convert.map | Man page |
| convert.scanone | Man page |
| convert.scantwo | Man page |
| convert2bcsft | Man page |
| convert2riself | Man page |
| convert2risib | Man page |
| convert2sa | Man page |
| countXO | Man page |
| create.map | Man page |
| drop.dupmarkers | Man page |
| drop.markers | Man page |
| drop.nullmarkers | Man page |
| dropfromqtl | Man page |
| droponemarker | Man page |
| effectplot | Man page |
| effectscan | Man page |
| est.map | Man page |
| est.rf | Man page |
| fake.4way | Man page |
| fake.bc | Man page |
| fake.f2 | Man page |
| fill.geno | Man page |
| find.flanking | Man page |
| find.marker | Man page |
| find.markerindex | Man page |
| find.markerpos | Man page |
| find.pheno | Man page |
| find.pseudomarker | Man page |
| find.pseudomarkerpos | Man page |
| findDupMarkers | Man page |
| fitqtl | Man page |
| fitstahl | Man page |
| flipcross | Man page |
| formLinkageGroups | Man page |
| genAllPartitions | Man page |
| geno.crosstab | Man page |
| geno.image | Man page |
| geno.table | Man page |
| getgenonames | Man page |
| getid | Man page |
| getsex | Man page |
| groupclusteredheatmap | Man page |
| hyper | Man page |
| imf.cf | Man page |
| imf.h | Man page |
| imf.k | Man page |
| imf.m | Man page |
| imf.stahl | Man page |
| inferFounderHap | Man page |
| inferredpartitions | Man page |
| interpPositions | Man page |
| jittermap | Man page |
| listeria | Man page |
| locateXO | Man page |
| locatemarker | Man page |
| locations | Man page |
| lodint | Man page |
| makeqtl | Man page |
| map10 | Man page |
| mapthis | Man page |
| markerlrt | Man page |
| markernames | Man page |
| max.scanPhyloQTL | Man page |
| max.scanone | Man page |
| max.scantwo | Man page |
| max.scantwocondensed | Man page |
| mf.cf | Man page |
| mf.h | Man page |
| mf.k | Man page |
| mf.m | Man page |
| mf.stahl | Man page |
| movemarker | Man page |
| mqm_version | Man page |
| mqmaugment | Man page |
| mqmautocofactors | Man page |
| mqmextractmarkers | Man page |
| mqmfind.marker | Man page |
| mqmgetmodel | Man page Man page |
| mqmpermutation | Man page |
| mqmplot.circle | Man page |
| mqmplot.cistrans | Man page |
| mqmplot.clusteredheatmap | Man page |
| mqmplot.cofactors | Man page |
| mqmplot.directedqtl | Man page |
| mqmplot.heatmap | Man page |
| mqmplot.multitrait | Man page |
| mqmplot.permutations | Man page |
| mqmplot.singletrait | Man page |
| mqmprocesspermutation | Man page |
| mqmscan | Man page |
| mqmscanall | Man page |
| mqmscanfdr | Man page |
| mqmsetcofactors | Man page |
| mqmtestnormal | Man page |
| multitrait | Man page |
| nchr | Man page |
| nind | Man page |
| nmar | Man page |
| nmissing | Man page |
| nphe | Man page |
| nqrank | Man page |
| ntyped | Man page |
| nullmarkers | Man page |
| orderMarkers | Man page |
| phenames | Man page |
| pickMarkerSubset | Man page |
| plot.cross | Man page |
| plot.errorlod | Man page |
| plot.geno | Man page |
| plot.info | Man page |
| plot.map | Man page |
| plot.missing | Man page |
| plot.pheno | Man page |
| plot.pxg | Man page |
| plot.qtl | Man page |
| plot.rf | Man page |
| plot.rfmatrix | Man page |
| plot.scanPhyloQTL | Man page |
| plot.scanone | Man page |
| plot.scanoneboot | Man page |
| plot.scanoneperm | Man page |
| plot.scantwo | Man page |
| plot.scantwoperm | Man page |
| plotErrorlod | Man page |
| plotGeno | Man page |
| plotInfo | Man page |
| plotLodProfile | Man page |
| plotMap | Man page |
| plotMissing | Man page |
| plotModel | Man page |
| plotPXG | Man page |
| plotPheno | Man page |
| plotRF | Man page |
| polyplot | Man page |
| print.addcovarint | Man page |
| print.addint | Man page |
| print.compactqtl | Man page |
| print.cross | Man page |
| print.map | Man page |
| print.qtl | Man page |
| print.scanoneboot | Man page |
| print.scantwo | Man page |
| print.summary.addpair | Man page |
| print.summary.compactqtl | Man page |
| print.summary.cross | Man page |
| print.summary.fitqtl | Man page |
| print.summary.map | Man page |
| print.summary.qtl | Man page |
| print.summary.ripple | Man page |
| print.summary.scanone | Man page |
| print.summary.scanoneperm | Man page |
| print.summary.scantwo | Man page |
| print.summary.scantwo.old | Man page |
| print.summary.scantwoperm | Man page |
| pull.argmaxgeno | Man page |
| pull.draws | Man page |
| pull.geno | Man page |
| pull.genoprob | Man page |
| pull.map | Man page |
| pull.markers | Man page |
| pull.pheno | Man page |
| pull.rf | Man page |
| qtl-package | Man page |
| qtlversion | Man page |
| rbind.scanoneperm | Man page |
| rbind.scantwoperm | Man page |
| read.cross | Man page |
| readMWril | Man page |
| refineqtl | Man page |
| reorderqtl | Man page |
| replace.map | Man page |
| replacemap | Man page |
| replacemap.cross | Man page |
| replacemap.scanone | Man page |
| replacemap.scantwo | Man page |
| replaceqtl | Man page |
| rescalemap | Man page |
| ripple | Man page |
| scanPhyloQTL | Man page |
| scanall | Man page |
| scanone | Man page |
| scanoneboot | Man page |
| scanqtl | Man page |
| scantwo | Man page |
| shiftmap | Man page |
| sim.cross | Man page |
| sim.geno | Man page |
| sim.map | Man page |
| simFounderSnps | Man page |
| simPhyloQTL | Man page |
| simulatemissingdata | Man page |
| stepwiseqtl | Man page |
| strip.partials | Man page |
| subrousummaryscantwo | Man page |
| subset.cross | Man page |
| subset.map | Man page |
| subset.scanone | Man page |
| subset.scanoneperm | Man page |
| subset.scantwo | Man page |
| subset.scantwoperm | Man page |
| summary.addcovarint | Man page |
| summary.addint | Man page |
| summary.compactqtl | Man page |
| summary.cross | Man page |
| summary.fitqtl | Man page |
| summary.map | Man page |
| summary.qtl | Man page |
| summary.ripple | Man page |
| summary.scanPhyloQTL | Man page |
| summary.scanone | Man page |
| summary.scanoneboot | Man page |
| summary.scanoneperm | Man page |
| summary.scantwo | Man page |
| summary.scantwo.old | Man page |
| summary.scantwocondensed | Man page |
| summary.scantwoperm | Man page |
| summaryMap | Man page |
| summaryScantwoOld | Man page |
| switch.order | Man page |
| switchAlleles | Man page |
| top.errorlod | Man page |
| totmar | Man page |
| transformPheno | Man page |
| tryallpositions | Man page |
| typingGap | Man page |
| write.cross | Man page |
| xaxisloc.scanone | Man page |
