Man pages for bzhanglab/WebGestaltR
Gene Set Analysis Toolkit WebGestaltR
| affinityPropagation | Affinity Propagation |
| cacheUrl | cacheUrl |
| createMetaReport | createMetaReport |
| createMetaSummaryReport | createMetaSummaryReport |
| createNtaReport | Create HTML Report for NTA |
| createReport | createReport |
| enrichResultSection | enrichResultSection |
| expandDag | Expand enriched GO IDs to include ancestors up to the root |
| fill_input_data_frame | Fill relation data frame for GSEA input |
| formatCheck | Check Format and Read Data |
| goSlimSummary | GO Slim Summary |
| gsea_rust | Run GSEA using rust library |
| idMapping | ID Mapping |
| jaccardSim | Jaccard Similarity |
| keepRep | keepRep |
| kMedoid | kMedoid |
| linkModification | Modify the link to highlight the genes in the pathways |
| listArchiveUrl | List WebGestalt Servers |
| listGeneSet | List Gene Sets |
| listIdType | List ID Types |
| listOrganism | List Organisms |
| listReferenceSet | List Reference Sets |
| loadGeneSet | Load gene set data |
| metaEnrichResultSection | metaEnrichResultSection |
| metaLinkModification | Modify the link to highlight the genes in the pathways |
| metaSummaryDescription | metaSummaryDescription |
| multiswGsea | Site Weighted Gene Set Enrichment Analysis |
| nta_rust | Calculate random walk permutations for a network from seeds |
| ora_rust | Run ORA using Rust library |
| prepareGseaInput | Prepare input for standard GSEA |
| prepareInputMatrixGsea | Prepare Input Matrix for GSEA |
| readGmt | Read GMT File |
| rust_multiomics_ora | Run multiomics ORA using Rust library |
| specificParameterSummaryGsea | specificParameterSummaryGsea |
| specificParameterSummaryOra | specificParameterSummaryOra |
| summaryDescription | summaryDescription |
| swGsea | Site Weighted Gene Set Enrichment Analysis |
| WebGestaltR | WebGestaltR: The R interface for enrichment analysis with... |
| WebGestaltRMultiOmics | WebGestaltRMultiOmics |
| WebGestaltRMultiOmicsGSEA | Multi-omics GSEA importFrom dplyr bind_rows left_join arrange... |
| WebGestaltRMultiOmicsOra | Multi-omics ORA importFrom dplyr bind_rows left_join arrange... |
| weightedSetCover | Weighted Set Cover |
