createMetaSummaryReport: createMetaSummaryReport

In bzhanglab/WebGestaltR: Gene Set Analysis Toolkit WebGestaltR

createMetaSummaryReport

Description

Generate HTML report for ORA and GSEA

Usage

createMetaSummaryReport(
  hostName,
  outputDirectory,
  organism = "hsapiens",
  projectName,
  enrichMethod,
  geneSet,
  geneSetDes,
  geneSetDag,
  geneSetNet,
  interestingGeneMap,
  referenceGeneList,
  enrichedSig,
  geneTables,
  clusters,
  background,
  enrichDatabase = NULL,
  enrichDatabaseFile = NULL,
  enrichDatabaseType = NULL,
  enrichDatabaseDescriptionFile = NULL,
  interestGeneFile = NULL,
  interestGene = NULL,
  interestGeneType = NULL,
  collapseMethod = "mean",
  referenceGeneFile = NULL,
  referenceGene = NULL,
  referenceGeneType = NULL,
  referenceSet = NULL,
  minNum = 10,
  maxNum = 500,
  fdrMethod = "BH",
  sigMethod = "fdr",
  fdrThr = 0.05,
  topThr = 10,
  reportNum = 20,
  perNum = 1000,
  p = 1,
  dagColor = "binary",
  is_meta = TRUE,
  outputHtmlFile = NULL,
  listNames = NULL
)

bzhanglab/WebGestaltR documentation built on April 27, 2024, 8:18 p.m.