listGeneSet: List Gene Sets

In bzhanglab/WebGestaltR: Gene Set Analysis Toolkit WebGestaltR

List Gene Sets

Description

List available gene sets for the given organism on WebGestalt server.

Usage

listGeneSet(
  organism = "hsapiens",
  hostName = "https://www.webgestalt.org/",
  cache = NULL
)

Arguments

organism	Currently, WebGestaltR supports 12 organisms. Users can use the function listOrganism to check available organisms. Users can also input others to perform the enrichment analysis for other organisms not supported by WebGestaltR. For other organisms, users need to provide the functional categories, interesting list and reference list (for ORA method). Because WebGestaltR does not perform the ID mapping for the other organisms, the above data should have the same ID type.
hostName	The server URL for accessing data. Mostly for development purposes.
cache	A directory to save data cache for reuse. Defaults to NULL and disabled.

Value

A data frame of available gene sets.

bzhanglab/WebGestaltR documentation built on March 7, 2024, 2:55 p.m.