weightedSetCover: Weighted Set Cover
In bzhanglab/WebGestaltR: Gene Set Analysis Toolkit WebGestaltR
View source: R/weightedSetCover.R
weightedSetCover R Documentation
Weighted Set Cover
Description
Size constrained weighted set cover problem to find top N sets while
maximizing the coverage of all elements.
Usage
weightedSetCover(idsInSet, costs, topN, nThreads = 4)
Arguments
idsInSet
A list of set names and their member IDs.
costs
A vector of the same length to add weights for penalty, i.e. 1/-logP.
topN
The number of sets (or less when it completes early) to return.
nThreads
The number of processes to use. In Windows, it fallbacks to 1.
Value
A list of topSets and coverage.
- topSets
A list of set IDs.
- coverage
The percentage of IDs covered in the top sets.
Author(s)
Zhiao Shi, Yuxing Liao
bzhanglab/WebGestaltR documentation built on March 7, 2024, 2:55 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/weightedSetCover.R
| weightedSetCover | R Documentation |
Weighted Set Cover
Description
Size constrained weighted set cover problem to find top N sets while maximizing the coverage of all elements.
Usage
weightedSetCover(idsInSet, costs, topN, nThreads = 4)
Arguments
idsInSet |
A list of set names and their member IDs. |
costs |
A vector of the same length to add weights for penalty, i.e. 1/-logP. |
topN |
The number of sets (or less when it completes early) to return. |
nThreads |
The number of processes to use. In Windows, it fallbacks to 1. |
Value
A list of topSets and coverage.
- topSets
A list of set IDs.
- coverage
The percentage of IDs covered in the top sets.
Author(s)
Zhiao Shi, Yuxing Liao
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.