View source: R/createMetaReport.R
createMetaReport | R Documentation |
Generate HTML report for ORA and GSEA MetaAnalysis
createMetaReport(
hostName = NULL,
outputDirectory = NULL,
organism = "hsapiens",
projectName = NULL,
enrichMethod = NULL,
geneSet_list = NULL,
geneSetDes_list = NULL,
geneSetDag_list = NULL,
geneSetNet_list = NULL,
interestingGeneMap_list = NULL,
referenceGeneList_list = NULL,
enrichedSig_list = NULL,
geneTables_list = NULL,
clusters_list = NULL,
background_list,
enrichDatabase_list = NULL,
enrichDatabaseFile_list = NULL,
enrichDatabaseType_list = NULL,
enrichDatabaseDescriptionFile_list = NULL,
interestGeneFile_list = NULL,
interestGene_list = NULL,
interestGeneType_list = NULL,
collapseMethod = "mean",
referenceGeneFile_list = NULL,
referenceGene_list = NULL,
referenceGeneType_list = NULL,
referenceSet_list = NULL,
minNum = 10,
maxNum = 500,
fdrMethod = "BH",
sigMethod = "fdr",
fdrThr = 0.05,
topThr = 10,
reportNum = 20,
perNum = 1000,
p = 1,
dagColor = "binary",
listNames = NULL
)
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