c5sire/kmerize: K-Mer Tools for Building Databases

It provides convenience tools for creating and analyzing 'k-mers'. It aims at supporting the building of databases. Therefore, here the focus is on tools to routinely process 'fasta' and 'fastq' formatted DNA sequence data into efficient file formats for further processing like querying and filtering. It features a tool to check on possible 'k-mer' sizes using a genomic response approach, as well as a plotting function to map k-mer matches against a reference sequence quickly.

Getting started

Package details

AuthorReinhard Simon [aut, cre] (<https://orcid.org/0000-0002-4608-9077>)
MaintainerReinhard Simon <rsimon64@gmail.com>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
c5sire/kmerize documentation built on June 7, 2020, 9:26 p.m.