kmr_calc_k_limit: kmr_calc_k_limit
In c5sire/kmerize: K-Mer Tools for Building Databases
Description
Usage
Arguments
Value
Examples
View source: R/kmr_calc_k_limit.R
Description
Calculates the k corresponding to a limit relative to the distinct number of
k-mers.
Usage
1
kmr_calc_k_limit(res, limit = 0.95)
Arguments
res
a dataframe
limit
numeric between 0 and 1
Value
list k and limit values
Examples
1
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11
if (interactive()) {
fa <- system.file("testdata/phix174.fasta",
package = "kmerize")
k <- as.integer(seq(5, 17, 2))
res <- kmr_response(fa, k)
kmr_calc_k_limit(res)
}
c5sire/kmerize documentation built on June 7, 2020, 9:26 p.m.
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Description Usage Arguments Value Examples
View source: R/kmr_calc_k_limit.R
Description
Calculates the k corresponding to a limit relative to the distinct number of k-mers.
Usage
1 | kmr_calc_k_limit(res, limit = 0.95)
|
Arguments
res |
a dataframe |
limit |
numeric between 0 and 1 |
Value
list k and limit values
Examples
1 2 3 4 5 6 7 8 9 10 11 | if (interactive()) {
fa <- system.file("testdata/phix174.fasta",
package = "kmerize")
k <- as.integer(seq(5, 17, 2))
res <- kmr_response(fa, k)
kmr_calc_k_limit(res)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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