Files in c5sire/kmerize

K-Mer Tools for Building Databases

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

NEWS.md R/assure_file_ext.R R/assure_kmc3_ext.R R/calc_kmer_summary.R R/check_install_ok.R R/cmp.R R/corename.R R/detect_str.R R/dmp.R R/get_kmc_base.R R/get_kmc_dir.R R/get_os.R R/get_safe_path.R R/histogram.R R/is_dir.R R/kmc.R R/kmr_calc_k_limit.R R/kmr_compare.R R/kmr_count.R R/kmr_histogram.R R/kmr_install_kmc.R R/kmr_length_fasta.R R/kmr_map_kmers.R R/kmr_plot_map.R R/kmr_plot_response.R R/kmr_position_coverage.R R/kmr_read_parquet.R R/kmr_read_rds.R R/kmr_read_tab.R R/kmr_response.R R/kmr_saveas.R R/kmr_scan_k_min.R R/kmr_write_parquet.R R/kmr_write_rds.R R/kmr_write_tab.R README.Rmd README.md

appveyor.yml

codecov.yml

doc/Basic.R doc/Basic.Rmd

doc/Basic.html

doc/Tutorial_install.R doc/Tutorial_install.Rmd

doc/Tutorial_install.html

docs/404.html

docs/articles/Basic.html

docs/articles/Basic_files/figure-html/unnamed-chunk-5-1.png

docs/articles/Basic_files/figure-html/unnamed-chunk-6-1.png

docs/articles/Tutorial_install.html

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/notes.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/figures/README-pressure-1.png

docs/reference/index.html

docs/reference/kmr_calc_k_limit.html

docs/reference/kmr_compare.html

docs/reference/kmr_count.html

docs/reference/kmr_histogram.html

docs/reference/kmr_install_kmc.html

docs/reference/kmr_length_fasta.html

docs/reference/kmr_map_kmers.html

docs/reference/kmr_plot_map.html

docs/reference/kmr_plot_response.html

docs/reference/kmr_position_coverage.html

docs/reference/kmr_read_parquet.html

docs/reference/kmr_read_rds.html

docs/reference/kmr_read_tab.html

docs/reference/kmr_response.html

docs/reference/kmr_scan_k_min.html

docs/reference/kmr_write_parquet.html

docs/reference/kmr_write_rds.html

docs/reference/kmr_write_tab.html

inst/testdata/phix174-pe_w_err_5k_30q.fastq.gz

inst/testdata/phix174.fasta

inst/testdata/phix174_m-pe_w_err_5k_30q.fastq.gz

inst/testdata/phix174_m.fasta

inst/testdata/phix_174.gff3

kmerize.Rproj

man/kmr_calc_k_limit.Rd man/kmr_compare.Rd man/kmr_count.Rd man/kmr_histogram.Rd man/kmr_install_kmc.Rd man/kmr_length_fasta.Rd man/kmr_map_kmers.Rd man/kmr_plot_map.Rd man/kmr_plot_response.Rd man/kmr_position_coverage.Rd man/kmr_read_parquet.Rd man/kmr_read_rds.Rd man/kmr_read_tab.Rd man/kmr_response.Rd man/kmr_scan_k_min.Rd man/kmr_write_parquet.Rd man/kmr_write_rds.Rd man/kmr_write_tab.Rd tests/testthat.R tests/testthat/test-assure_file_ext.R tests/testthat/test-check_install_ok.R tests/testthat/test-get_kmc_dir.R tests/testthat/test-kmer_compare.R tests/testthat/test-kmer_response.R tests/testthat/test-kmr_calc_k_limit.R tests/testthat/test-kmr_count.R tests/testthat/test-kmr_install_kmc.R tests/testthat/test-kmr_length_fasta.R tests/testthat/test-kmr_map_kmers.R tests/testthat/test-kmr_position_coverage.R tests/testthat/test-kmr_scan_k_min.R tests/testthat/test-kmr_write_read_formats.R

vignettes/.gitignore

vignettes/Basic.Rmd vignettes/Tutorial_install.Rmd

vignettes/logs/log4j.spark.log

c5sire/kmerize documentation built on June 7, 2020, 9:26 p.m.