knitr::opts_chunk$set( collapse = TRUE, comment = "#>" )
library(kmerize)
install.packages("devtools") devtools::install_github("c5sire/kmerize")
This package uses 3rd party tools for basic optimized k-mer creation. Currently, this is the KMC3 set of tools (REF). The toolkit needs to be installed via the provided function. If no reference to a local file is provided, the appropriate version for your local operating sytem (OS) will automatically be chosen as shown below.
kmerize::kmr_install_kmc()
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