In cReedHranac/batwintor: Tool for bat hibernation energetics

library(knitr)
opts_chunk$set(tidy.opts=list(width.cutoff=80),tidy=TRUE)
knitr::opts_chunk$set(echo = TRUE)
#opts_chunk$set(dev = 'pdf')

This vignettes was created to showcase the plotting features of batwintor allowing one to visualize the results of modeled hibernation across both theoretical space and geographical space. If you'd see how the data was created please see the WalkThrough vignette also available though this package.

The data

The model results are packaged within this package so you can call them by simply

library(batwintor);library(data.table)
data("mylu.mod")

If you'd like to explore the data, or the structure of the data checkout ?myca.mod

Plots

DangerZone

One of my favorite plots, partially for the name, but mainly for the way that it allows you to visualize theoretical space is the DangerZone plot.

DangerZone(mylu.mod, species.option = "Mylu")

This plot shows the difference in the maximal length of hibernation between the infected and uninfected bats. The warm colors in the figure show were hibernation is impacted the most, and in this example you can see that it suffers from a ~6 month reduction in maximal length of hibernation in the worst conditions. In conditions more optimal for sustained hibernation those losses in are more in 0-2 month range. This function also has a nice feature were if you supply a file path to the save.name argument it will save the output for you.

cReedHranac/batwintor documentation built on Jan. 27, 2020, 7:39 p.m.