export_ISA_settings: Export a dynamic vars settings profile.

In calabrialab/ISAnalytics: Analyze gene therapy vector insertion sites data identified from genomics next generation sequencing reads for clonal tracking studies

Export a dynamic vars settings profile.

Description

This function allows exporting the currently set dynamic vars in json format so it can be quickly imported later. Dynamic variables need to be properly set via the setter functions before calling the function. For more details, refer to the dedicated vignette vignette("workflow_start", package="ISAnalytics").

Usage

export_ISA_settings(folder, setting_profile_name)

Arguments

folder	The path to the folder where the file should be saved. If the folder doesn't exist, it gets created automatically
setting_profile_name	A name for the settings profile

Value

NULL

See Also

Other Utilities: as_sparse_matrix(), comparison_matrix(), enable_progress_bars(), generate_Vispa2_launch_AF(), generate_blank_association_file(), generate_default_folder_structure(), import_ISA_settings(), separate_quant_matrices(), transform_columns()

Examples

tmp_folder <- tempdir()
export_ISA_settings(tmp_folder, "DEFAULT")

calabrialab/ISAnalytics documentation built on Nov. 2, 2023, 8:57 p.m.