import_ISA_settings: Import a dynamic vars settings profile.

In calabrialab/ISAnalytics: Analyze gene therapy vector insertion sites data identified from genomics next generation sequencing reads for clonal tracking studies

Import a dynamic vars settings profile.

Description

The function allows the import of an existing dynamic vars profile in json format. This is a quick and convenient way to set up the workflow, alternative to specifying lookup tables manually through the corresponding setter functions. For more details, refer to the dedicated vignette vignette("workflow_start", package="ISAnalytics").

Usage

import_ISA_settings(path)

Arguments

path	The path to the json file on disk

Value

NULL

See Also

Other Utilities: as_sparse_matrix(), comparison_matrix(), enable_progress_bars(), export_ISA_settings(), generate_Vispa2_launch_AF(), generate_blank_association_file(), generate_default_folder_structure(), separate_quant_matrices(), transform_columns()

Examples

tmp_folder <- tempdir()
export_ISA_settings(tmp_folder, "DEFAULT")
import_ISA_settings(fs::path(tmp_folder, "DEFAULT_ISAsettings.json"))
reset_dyn_vars_config()

calabrialab/ISAnalytics documentation built on Nov. 2, 2023, 8:57 p.m.