campbio/celda: CEllular Latent Dirichlet Allocation

Celda is a suite of Bayesian hierarchical models for clustering single-cell RNA-sequencing (scRNA-seq) data. It is able to perform "bi-clustering" and simultaneously cluster genes into gene modules and cells into cell subpopulations. It also contains DecontX, a novel Bayesian method to computationally estimate and remove RNA contamination in individual cells without empty droplet information. A variety of scRNA-seq data visualization functions is also included.

Getting started

Package details

Bioconductor views Bayesian Clustering GeneExpression Sequencing SingleCell
Maintainer
LicenseMIT + file LICENSE
Version1.9.2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("campbio/celda")
campbio/celda documentation built on Aug. 10, 2021, 11:03 a.m.