decontXcounts: Get or set decontaminated counts matrix

In campbio/celda: CEllular Latent Dirichlet Allocation

Get or set decontaminated counts matrix

Description

Gets or sets the decontaminated counts matrix from a a SingleCellExperiment object.

Usage

decontXcounts(object, ...)

decontXcounts(object, ...) <- value

## S4 method for signature 'SingleCellExperiment'
decontXcounts(object, ...)

## S4 replacement method for signature 'SingleCellExperiment'
decontXcounts(object, ...) <- value

Arguments

object	A SingleCellExperiment object.
...	For the generic, further arguments to pass to each method.
value	A matrix to save as an assay called decontXcounts

Value

If getting, the assay from object with the name decontXcounts will be returned. If setting, a SingleCellExperiment object will be returned with decontXcounts listed in the assay slot.

See Also

assay and assay<-

campbio/celda documentation built on April 5, 2024, 11:47 a.m.