compareCountMatrix: Check count matrix consistency

In campbio/celda: CEllular Latent Dirichlet Allocation

Check count matrix consistency

Description

Checks if the counts matrix is the same one used to generate the celda model object by comparing dimensions and MD5 checksum.

Usage

compareCountMatrix(counts, celdaMod, errorOnMismatch = TRUE)

## S4 method for signature 'ANY,celdaModel'
compareCountMatrix(counts, celdaMod, errorOnMismatch = TRUE)

## S4 method for signature 'ANY,celdaList'
compareCountMatrix(counts, celdaMod, errorOnMismatch = TRUE)

Arguments

counts	Integer , Numeric, or Sparse matrix. Rows represent features and columns represent cells.
celdaMod	A celdaModel or celdaList object.
errorOnMismatch	Logical. Whether to throw an error in the event of a mismatch. Default TRUE.

Value

Returns TRUE if provided count matrix matches the one used in the celda object and/or errorOnMismatch = FALSE, FALSE otherwise.

Examples

data(celdaCGSim, celdaCGMod)
compareCountMatrix(celdaCGSim$counts, celdaCGMod, errorOnMismatch = FALSE)
data(celdaCGSim, celdaCGGridSearchRes)
compareCountMatrix(celdaCGSim$counts, celdaCGGridSearchRes,
    errorOnMismatch = FALSE)

campbio/celda documentation built on April 5, 2024, 11:47 a.m.