logLikelihoodHistory: Get log-likelihood history

In campbio/celda: CEllular Latent Dirichlet Allocation

Get log-likelihood history

Description

Retrieves the complete log-likelihood from all iterations of Gibbs sampling used to generate a celda model.

Usage

logLikelihoodHistory(x, altExpName = "featureSubset")

## S4 method for signature 'SingleCellExperiment'
logLikelihoodHistory(x, altExpName = "featureSubset")

## S4 method for signature 'celdaModel'
logLikelihoodHistory(x)

Arguments

x	A SingleCellExperiment object returned by celda_C, celda_G, or celda_CG, or a celda model object.
altExpName	The name for the altExp slot to use. Default "featureSubset".

Value

Numeric. The log-likelihood at each step of Gibbs sampling used to generate the model.

Examples

data(sceCeldaCG)
logLikelihoodHistory(sceCeldaCG)
data(celdaCGMod)
logLikelihoodHistory(celdaCGMod)

campbio/celda documentation built on April 5, 2024, 11:47 a.m.