get_guides_failing_filter: Identify guides failing count filter.

In cancerit/RCRISPR: R Functions for CRISPR-Related Analyses

Identify guides failing count filter.

Description

Identify guides which fail count filter.

Usage

get_guides_failing_filter(
  count_matrix = NULL,
  id_column = 1,
  count_column = NULL,
  filter_indices = NULL,
  filter_method = "all",
  min_reads = 30
)

Arguments

count_matrix	count matrix.
id_column	index of column containing unique sgRNA identifiers.
count_column	indices of columns containing counts.
filter_indices	indices of columns on which to apply filter.
filter_method	filter method from one of: all, any, mean or median (Default: all).
min_reads	minimum number of reads for filter (Default: 30).

Value

dataframe

cancerit/RCRISPR documentation built on April 26, 2023, 10:12 p.m.