API for caravagn/TINC
TINC - Tumour-in-Normal contamination assessment
| Global functions | |
|---|---|
| .onLoad | Source code |
| TIN_profiler | Source code |
| analyse_BMix | Source code |
| analyse_mobster | Source code |
| analysis_mode | Source code |
| analyze_VIBER | Source code |
| as_joint | Source code |
| as_normal | Source code |
| as_tumour | Source code |
| autofit | Man page Source code |
| bin_heatmap | Source code |
| check_CHIP_variants | Man page Source code |
| check_CHIP_variants_BAM | Source code |
| check_CHIP_variants_VCF | Source code |
| classification_normal | Source code |
| classification_tumour | Source code |
| fit_example | Man page |
| guess_mobster_clonal_cluster | Source code |
| load_TINC_input | Man page Source code |
| load_VCF_CNA_DRAGEN | Man page Source code |
| load_VCF_Canvas | Man page Source code |
| load_VCF_Canvas_Manta | Man page Source code |
| load_VCF_Strelka | Man page Source code |
| load_VCF_smallVar_DRAGEN | Man page Source code |
| location_likelihood | Source code |
| my_ggplot_theme | Source code |
| plot.tin_obj | Man page Source code |
| plot_Bmix_fit | Source code |
| plot_contamination_full_size | Source code |
| plot_contamination_zoom | Source code |
| plot_full_page_report | Man page Source code |
| plot_joint_data | Source code |
| plot_mobster_fit | Source code |
| plot_normal_data | Source code |
| plot_normal_data_inline | Source code |
| plot_raw | Source code |
| plot_sample_contamination | Source code |
| plot_simple_report | Man page Source code |
| plot_tumour_data | Source code |
| print.tin_obj | Man page Source code |
| pullAD | Source code |
| pullAD_CNA_DRAGEN | Source code |
| pullAD_DRAGEN | Source code |
| random_CNA | Source code |
| random_TIN | Man page Source code |
| to_string | Man page Source code |
