Files in caravagn/TINC
TINC - Tumour-in-Normal contamination assessment
.DS_Store
.Rbuildignore
.github/.gitignore
.github/workflows/check-standard.yaml
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/.DS_Store
R/S3_methods.R
R/TIN_profiler.R
R/analyses.R
R/autofit.R
R/check_CHIP_variants.R
R/data.R
R/data_transformation.R
R/library.R
R/load_TINC_input.R
R/parsers.R
R/plot_full_page_report.R
R/plot_simple_report.R
R/plotting_data_functions.R
R/random_TIN.R
R/to_string.R
R/utils_fit_normal.R
R/utils_fit_tumour.R
R/utils_plot.R
R/utils_profiler.R
R/zzz.R
README.Rmd
README.md
_config.yml
_pkgdown.yml
codecov.yml
data/chip_hotspots.rda
data/chip_mutations.rda
data/fit_example.rda
docs/404.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/Analysis.html
docs/articles/Analysis_files/figure-html/unnamed-chunk-2-1.png
docs/articles/Analysis_files/figure-html/unnamed-chunk-6-1.png
docs/articles/Analysis_files/figure-html/unnamed-chunk-7-1.png
docs/articles/Analysis_files/header-attrs-2.11/header-attrs.js
docs/articles/TINC.html
docs/articles/TINC_files/header-attrs-2.11/header-attrs.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/autofit.html
docs/reference/check_CHIP_variants.html
docs/reference/figures/logo.png
docs/reference/fit_example.html
docs/reference/index.html
docs/reference/load_TINC_input.html
docs/reference/load_VCF_CNA_DRAGEN.html
docs/reference/load_VCF_Canvas.html
docs/reference/load_VCF_Canvas_Manta.html
docs/reference/load_VCF_Strelka.html
docs/reference/load_VCF_smallVar_DRAGEN.html
docs/reference/plot.tin_obj.html
docs/reference/plot_full_page_report.html
docs/reference/plot_simple_report.html
docs/reference/print.tin_obj.html
docs/reference/random_TIN-1.png
docs/reference/random_TIN.html
docs/reference/to_string.html
docs/sitemap.xml
man/autofit.Rd
man/check_CHIP_variants.Rd
man/figures/logo.png
man/fit_example.Rd
man/load_TINC_input.Rd
man/load_VCF_CNA_DRAGEN.Rd
man/load_VCF_Canvas.Rd
man/load_VCF_Canvas_Manta.Rd
man/load_VCF_Strelka.Rd
man/load_VCF_smallVar_DRAGEN.Rd
man/plot.tin_obj.Rd
man/plot_full_page_report.Rd
man/plot_simple_report.Rd
man/print.tin_obj.Rd
man/random_TIN.Rd
man/to_string.Rd
nobuild/chip_mutations_hg38.csv
nobuild/hg19_chip_mutations.rda
nobuild/hg38_chip_mutations.rda
nobuild/load_input.R
nobuild/tmphg19.tsv
nobuild/tmphg38.tsv
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
vignettes/.gitignore
vignettes/Analysis.Rmd
vignettes/TINC.Rmd
