get_drivers: Extract drivers data.
In caravagnalab/CNAqc: CNAqc - Copy Number Analysis quality check

get_drivers

R Documentation

Extract drivers data.

Description

Returns a tibble with the drivers annotated on certain chromosomes, extracting VAF or CCF values (if computed). If drivers are not annotated NULL is returned.

Usage

get_drivers(x, chromosomes = paste0("chr", c(1:22, "X", "Y")), which = "VAF")

Arguments

`x`	A CNAqc object.
`chromosomes`	Which chromosomes to subset.
`which`	A keyword for `"VAF"` or `"CCF"`.

Value

A tibble

Examples

data('example_dataset_CNAqc', package = 'CNAqc')
x = init(mutations = example_dataset_CNAqc$mutations, cna = example_dataset_CNAqc$cna, purity = example_dataset_CNAqc$purity)

get_drivers(x)

caravagnalab/CNAqc documentation built on Oct. 31, 2024, 3:54 a.m.