plot_SBS: Plost SBS counts
In caravagnalab/CNAqc: CNAqc - Copy Number Analysis quality check
plot_SBS R Documentation
Plost SBS counts
Usage
plot_SBS(x, highlight = 0.05)
Arguments
x
A CNAqc object.
highlight
Minimum frequency to color in red a bar of the barplot (default 5
A ggplot object.
Canonical plot of SBS count from a sample, obtained
upon mapping substitutions to contexts via function SBS.
The function allows to highlight in red a substitution that occurs with
a frequency above a desired cutoff (default 5
data('example_dataset_CNAqc')
x = init(mutations = example_dataset_CNAqc$mutations, cna =example_dataset_CNAqc$cna, purity = example_dataset_CNAqc$purity)
x = SBS(x)
# SBS plot
plot_SBS(x)
caravagnalab/CNAqc documentation built on Oct. 31, 2024, 3:54 a.m.
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| plot_SBS | R Documentation |
Plost SBS counts
Usage
plot_SBS(x, highlight = 0.05)
Arguments
x |
A CNAqc object. |
highlight |
Minimum frequency to color in red a bar of the barplot (default 5 |
A ggplot object.
Canonical plot of SBS count from a sample, obtained
upon mapping substitutions to contexts via function SBS.
The function allows to highlight in red a substitution that occurs with a frequency above a desired cutoff (default 5 data('example_dataset_CNAqc') x = init(mutations = example_dataset_CNAqc$mutations, cna =example_dataset_CNAqc$cna, purity = example_dataset_CNAqc$purity)
x = SBS(x)
# SBS plot plot_SBS(x)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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