plot_gw_counts: Plot genome-wide mutation counts.
In caravagnalab/CNAqc: CNAqc - Copy Number Analysis quality check
View source: R/plot_genome_wide_mutations.R
plot_gw_counts R Documentation
Plot genome-wide mutation counts.
Description
Plot a genome-wide histogram of mutation counts, binned
every one megabase ('1e6' nucleotides).
Usage
plot_gw_counts(x, chromosomes = paste0("chr", c(1:22, "X", "Y")))
Arguments
x
A CNAqc object.
chromosomes
The chromosomes to use for this plot.
Value
A ggplot2 plot.
Examples
data('example_dataset_CNAqc', package = 'CNAqc')
x = init(mutations = example_dataset_CNAqc$mutations, cna = example_dataset_CNAqc$cna, purity = example_dataset_CNAqc$purity)
plot_gw_counts(x)
caravagnalab/CNAqc documentation built on Oct. 31, 2024, 3:54 a.m.
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View source: R/plot_genome_wide_mutations.R
| plot_gw_counts | R Documentation |
Plot genome-wide mutation counts.
Description
Plot a genome-wide histogram of mutation counts, binned every one megabase ('1e6' nucleotides).
Usage
plot_gw_counts(x, chromosomes = paste0("chr", c(1:22, "X", "Y")))
Arguments
x |
A CNAqc object. |
chromosomes |
The chromosomes to use for this plot. |
Value
A ggplot2 plot.
Examples
data('example_dataset_CNAqc', package = 'CNAqc')
x = init(mutations = example_dataset_CNAqc$mutations, cna = example_dataset_CNAqc$cna, purity = example_dataset_CNAqc$purity)
plot_gw_counts(x)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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