sel.match: Select appropriate hits when searching a patter

In carlopacioni/amplicR: An R package to process amplicon data

Select appropriate hits when searching a patter

Description

This function is used internally by amplicR

Usage

sel.match(i, subjectSet, patt_hits, patt, type = "F")

Arguments

i	The index to subset patt_hitts
subjectSet	The set of sequences that were used for the search
patt_hits	The output from Biostrings::vmatchPattern()
patt	The patter used for the search
type	The type of match, either forward "F", or reverse "R"

carlopacioni/amplicR documentation built on Aug. 19, 2023, 7:59 p.m.