Files in carlopacioni/amplicR
An R package to process amplicon data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/amplicR.R
R/clean.deconv.R
R/collate.seqs.R
R/dart2BEAST2.R
R/data.proc.R
R/data.proc.paired.R
R/detect.R
R/fastsimcoal.R
R/helper.functions.R
R/make.phyloseq.R
R/setup.R
R/table2fasta.R
README.md
amplicR.Rproj
data/HTJ.ref.rda
inst/extdata/Fastsimcoal/Results/glindAmplic_DAFpop0.obs
inst/extdata/Fastsimcoal/Results/glindAmplic_MAFpop0.obs
inst/extdata/Fastsimcoal/Test/Bottleneck/1PopglindAmplicBot.est
inst/extdata/Fastsimcoal/Test/Bottleneck/1PopglindAmplicBot.tpl
inst/extdata/Fastsimcoal/Test/Bottleneck/1PopglindAmplicBot_MAFpop0.obs
inst/extdata/Fastsimcoal/Test/ExpSimple/glindAmplicExp.est
inst/extdata/Fastsimcoal/Test/ExpSimple/glindAmplicExp.tpl
inst/extdata/Fastsimcoal/Test/ExpSimple/glindAmplicExp_MAFpop0.obs
inst/extdata/Fastsimcoal/fsc2702
inst/extdata/Fastsimcoal/fsc2702.exe
inst/extdata/Fastsimcoal/fsc_run.txt
inst/extdata/Fastsimcoal/glindAmplic.rda
inst/extdata/HTJ/DAFWA#10.fastq.gz
inst/extdata/HTJ/DAFWA#11.fastq.gz
man/AIC.Rd
man/AIC.comp.Rd
man/amplicR.Rd
man/collate.seqs.Rd
man/dart2nexus.Rd
man/data.proc.Rd
man/data.proc.paired.Rd
man/deconv.Rd
man/detect.Rd
man/fsc.bootstraps.Rd
man/fsc.estimate.Rd
man/fsc.multiple.estimate.Rd
man/getRow.Rd
man/getSeqFromDerep.Rd
man/getnFiltered.Rd
man/getnUniques.Rd
man/gl2sfs.Rd
man/make.alleles.Rd
man/make.phyloseq.Rd
man/ndada.Rd
man/putna.Rd
man/putzero.Rd
man/raw2data.proc.Rd
man/replaceSNP.Rd
man/rmEndAdapter.Rd
man/sel.match.Rd
man/setup.Rd
man/subsetDerep.Rd
man/table2fasta.Rd
man/where2trim.Rd
man/write.nexus.Rd
tests/testthat.R
tests/testthat/test-collate.seqs.R
tests/testthat/test-dart2nexus.R
tests/testthat/test-dataproc.R
tests/testthat/test-detect.R
tests/testthat/test-fastsimcoal.R
tests/testthat/test-write.nexus.R
