get.marker.spillover: Get spillover coefficients
In carlosproca/autospill: AutoSpill: A method for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data
Description
Usage
Arguments
Value
References
See Also
View source: R/get_marker_spillover.r
Description
Calculates spillover coefficients with robust linear models.
Usage
1
get.marker.spillover(scale.untransformed, flow.gate, flow.control, asp)
Arguments
scale.untransformed
Logical indicating if calculation has to be run
in untransformed or transformed (bi-exponential) scale.
flow.gate
List of vectors with ids of gated events per sample.
flow.control
List with data and metadata of a set of controls.
asp
List with AutoSpill parameters.
Value
List of two matrices, with regressions intercepts and coefficients.
References
Roca et al:
AutoSpill: A method for calculating spillover coefficients to compensate
or unmix high-parameter flow cytometry data.
bioRxiv 2020.06.29.177196;
doi:10.1101/2020.06.29.177196
(2020).
See Also
gate.flow.data, read.flow.control, and
get.autospill.param.
carlosproca/autospill documentation built on Dec. 19, 2021, 1:52 p.m.
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Description Usage Arguments Value References See Also
View source: R/get_marker_spillover.r
Description
Calculates spillover coefficients with robust linear models.
Usage
1 | get.marker.spillover(scale.untransformed, flow.gate, flow.control, asp)
|
Arguments
scale.untransformed |
Logical indicating if calculation has to be run in untransformed or transformed (bi-exponential) scale. |
flow.gate |
List of vectors with ids of gated events per sample. |
flow.control |
List with data and metadata of a set of controls. |
asp |
List with AutoSpill parameters. |
Value
List of two matrices, with regressions intercepts and coefficients.
References
Roca et al: AutoSpill: A method for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data. bioRxiv 2020.06.29.177196; doi:10.1101/2020.06.29.177196 (2020).
See Also
gate.flow.data, read.flow.control, and
get.autospill.param.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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