Man pages for cbaumbach/genFun
Functions For Dealing With Genetic Data
| chr | Extract chromosome or chunk from file names |
| chr2int | Convert chromosome string to integer |
| combine_snptest | Summarize and combine 'snptest' output by chromosome |
| convert_to_dosages | Convert matrix of genotype probabilities to dosages |
| count_per_gene | Count number of points per gene |
| dot_attributes | Create and print dot format node or edge attributes |
| extract_snps | Extract snps from imputed chunk files |
| find_genes | Map SNPs to genes |
| genFun-package | Functions for dealing with genetic data |
| int2chr | Convert chromosome from integer to string |
| print.gene_ontology | Show gene ontology tree in dot format |
| read.gene_ontology | Create tree structure from gene ontology file |
| read.obo | Read gene ontology obo 1.2 file |
| region_plot | Plot snps with gene annotations |
| snptest | Run snptest gwas on multiple cores |
| unslash | Remove trailing slash from directory names |
