convert_to_dosages: Convert matrix of genotype probabilities to dosages
In cbaumbach/genFun: Functions For Dealing With Genetic Data

Description Usage Arguments Details Value Examples

Convert matrix of genotype probabilities to dosages

1
2
3

convert_to_dosages(aMatrix,
    model = c("additive", "recessive", "dominant"),
    in_terms_of_allele = c("B", "A"), transpose = FALSE)

`aMatrix`	Numeric matrix of genotype probabilities.
`model`	Type of genetic model to be used.
`in_terms_of_allele`	Allele in terms of which dosages should be computed.
`transpose`	Should the resulting matrix should have individuals as rows and dosages as columns?

Rows of the input matrix correspond to snps, consecutive triples of columns to individuals. Genotype probabilities are assumed to appear in the order AA, AB, BB. If ‘transpose’ is FALSE, the resulting matrix will have one row per snp and one column per individual. If ‘transpose’ is TRUE, the resulting matrix will have individuals in the rows and snps in the columns. Both snps and individuals will appear in the same order as in the input matrix.

Matrix with dosages.