read.obo: Read gene ontology obo 1.2 file

In cbaumbach/genFun: Functions For Dealing With Genetic Data

Description

Read gene ontology obo 1.2 file

Usage

read.obo(filename, colClasses = NULL)

Arguments

filename	Path to obo file.
colClasses	Character vector as used by read.table.

Value

Returns a data frame with one go term per row and the term-specific values of selected obo tags as columns.

See Also

read.table

Examples

library(genFun)

## Not run: 
cat("\
[Term]
id: GO:0000000
name: foobar
alt_id: GO:7654321
is_a: GO:1111111
is_a: GO:2222222
def: \"An imaginary go term.\"

[Term]
id: GO:3333333
name: bazqux
is_a: GO:4444444
def: \"Another imaginary go term.\"
", file = "foo.obo")
d <- read.obo("foo.obo")

## End(Not run)

cbaumbach/genFun documentation built on May 13, 2019, 1:47 p.m.