chr2int: Convert chromosome string to integer

In cbaumbach/genFun: Functions For Dealing With Genetic Data

Description

Convert chromosome string to integer.

Usage

chr2int(x, prefix = NULL)

Arguments

x	Character vector of chromosome strings to be converted to integer.
prefix	Prefix to be removed from chromosome strings before conversion.

Value

Returns chromosome numbers associated with chromosome strings in x as integers.

Examples

library(genFun)

chr2int(c("1", "MT", "X", "Y"))
chr2int(c("chr1", "chrMT", "chrX", "chrY"), prefix = "chr")

cbaumbach/genFun documentation built on May 13, 2019, 1:47 p.m.