Man pages for cbg-ethz/slidr
Discovery of mutation-specific synthetic lethal partners from large pan-cancer perturbation screens
| getCelllines | Retrieve cell lines for corresponding cancer type |
| getEssentialGenes | Get a list of essential genes |
| getPval | P-value for a given pair of genes |
| identifySLHits | Retrieve list of mutation-specific synthetic lethal partners... |
| IH_CDF | CDF for Irwin-Hall distribution |
| LiverData | SLIdR object for liver cancer. |
| plotSLBoxplot | Function to plot annotated box-plots of SL pairs for a given... |
| prepareCNMat | Prepare integer valued copy number matrix |
| prepareCNMatGistic | Prepare integer valued copy number matrix from Gistic based... |
| prepareDataObjects | Prepare the data object required for downstream analysis |
| prepareMutMat | Prepare mutation matrix |
| ttestSLHits | Retrieve list of mutation-specific synthetic lethal partners... |
| WilcoxSLHits | Retrieve list of mutation-specific synthetic lethal partners... |
