getEssentialGenes: Get a list of essential genes
In cbg-ethz/slidr: Discovery of mutation-specific synthetic lethal partners from large pan-cancer perturbation screens
View source: R/data_process_funcs.R
getEssentialGenes R Documentation
Get a list of essential genes
Description
The function takes in RSA data and returns a vector of essential genes
Usage
getEssentialGenes(x, celllines, data, thresh = -3)
Arguments
x
primary site. If 'NULL' then ensure that the 'celllines' passed match the colnames of data
celllines
subset of interested celllines
data
data frame of RSA normalised values
thresh
threshold for defining essentiality. Default = -3
Value
a vector of essential genes
cbg-ethz/slidr documentation built on Feb. 8, 2023, 11:15 p.m.
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View source: R/data_process_funcs.R
| getEssentialGenes | R Documentation |
Get a list of essential genes
Description
The function takes in RSA data and returns a vector of essential genes
Usage
getEssentialGenes(x, celllines, data, thresh = -3)
Arguments
x |
primary site. If 'NULL' then ensure that the 'celllines' passed match the colnames of data |
celllines |
subset of interested celllines |
data |
data frame of RSA normalised values |
thresh |
threshold for defining essentiality. Default = -3 |
Value
a vector of essential genes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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