getPval: P-value for a given pair of genes
In cbg-ethz/slidr: Discovery of mutation-specific synthetic lethal partners from large pan-cancer perturbation screens
View source: R/sl_test_funcs.R
getPval R Documentation
P-value for a given pair of genes
Description
Given the processed data object, a driver gene, and it's prospective partner, the
function returns the p-values for the wild type and mutated samples.
Usage
getPval(canc_data, driver_gene, sl_partner_gene)
Arguments
canc_data
Processed data object for a given cancer type.
driver_gene
The target mutated gene.
sl_partner_gene
The corresponding SL partner
Value
a dataframe of driver gene with its corresponding SL partner, the p-value in WT samples,
p-value in mutated samples.
cbg-ethz/slidr documentation built on Feb. 8, 2023, 11:15 p.m.
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View source: R/sl_test_funcs.R
| getPval | R Documentation |
P-value for a given pair of genes
Description
Given the processed data object, a driver gene, and it's prospective partner, the function returns the p-values for the wild type and mutated samples.
Usage
getPval(canc_data, driver_gene, sl_partner_gene)
Arguments
canc_data |
Processed data object for a given cancer type. |
driver_gene |
The target mutated gene. |
sl_partner_gene |
The corresponding SL partner |
Value
a dataframe of driver gene with its corresponding SL partner, the p-value in WT samples, p-value in mutated samples.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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